* refactor: extract shared utils to break harness→app cross-layer imports
Move _validate_skill_frontmatter to src/skills/validation.py and
CONVERTIBLE_EXTENSIONS + convert_file_to_markdown to src/utils/file_conversion.py.
This eliminates the two reverse dependencies from client.py (harness layer)
into gateway/routers/ (app layer), preparing for the harness/app package split.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* refactor: split backend/src into harness (deerflow.*) and app (app.*)
Physically split the monolithic backend/src/ package into two layers:
- **Harness** (`packages/harness/deerflow/`): publishable agent framework
package with import prefix `deerflow.*`. Contains agents, sandbox, tools,
models, MCP, skills, config, and all core infrastructure.
- **App** (`app/`): unpublished application code with import prefix `app.*`.
Contains gateway (FastAPI REST API) and channels (IM integrations).
Key changes:
- Move 13 harness modules to packages/harness/deerflow/ via git mv
- Move gateway + channels to app/ via git mv
- Rename all imports: src.* → deerflow.* (harness) / app.* (app layer)
- Set up uv workspace with deerflow-harness as workspace member
- Update langgraph.json, config.example.yaml, all scripts, Docker files
- Add build-system (hatchling) to harness pyproject.toml
- Add PYTHONPATH=. to gateway startup commands for app.* resolution
- Update ruff.toml with known-first-party for import sorting
- Update all documentation to reflect new directory structure
Boundary rule enforced: harness code never imports from app.
All 429 tests pass. Lint clean.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* chore: add harness→app boundary check test and update docs
Add test_harness_boundary.py that scans all Python files in
packages/harness/deerflow/ and fails if any `from app.*` or
`import app.*` statement is found. This enforces the architectural
rule that the harness layer never depends on the app layer.
Update CLAUDE.md to document the harness/app split architecture,
import conventions, and the boundary enforcement test.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* feat: add config versioning with auto-upgrade on startup
When config.example.yaml schema changes, developers' local config.yaml
files can silently become outdated. This adds a config_version field and
auto-upgrade mechanism so breaking changes (like src.* → deerflow.*
renames) are applied automatically before services start.
- Add config_version: 1 to config.example.yaml
- Add startup version check warning in AppConfig.from_file()
- Add scripts/config-upgrade.sh with migration registry for value replacements
- Add `make config-upgrade` target
- Auto-run config-upgrade in serve.sh and start-daemon.sh before starting services
- Add config error hints in service failure messages
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix comments
* fix: update src.* import in test_sandbox_tools_security to deerflow.*
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: handle empty config and search parent dirs for config.example.yaml
Address Copilot review comments on PR #1131:
- Guard against yaml.safe_load() returning None for empty config files
- Search parent directories for config.example.yaml instead of only
looking next to config.yaml, fixing detection in common setups
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
* fix: correct skills root path depth and config_version type coercion
- loader.py: fix get_skills_root_path() to use 5 parent levels (was 3)
after harness split, file lives at packages/harness/deerflow/skills/
so parent×3 resolved to backend/packages/harness/ instead of backend/
- app_config.py: coerce config_version to int() before comparison in
_check_config_version() to prevent TypeError when YAML stores value
as string (e.g. config_version: "1")
- tests: add regression tests for both fixes
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* fix: update test imports from src.* to deerflow.*/app.* after harness refactor
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
* feat(subagents): make subagent timeout configurable via config.yaml
- Add SubagentsAppConfig supporting global and per-agent timeout_seconds
- Load subagents config section in AppConfig.from_file()
- Registry now applies config.yaml overrides without mutating builtin defaults
- Polling safety-net in task_tool is now dynamic (execution timeout + 60s buffer)
- Document subagents section in config.example.yaml
- Add make test command and enforce TDD policy in CLAUDE.md
- Add 38 unit tests covering config validation, timeout resolution, registry
override behavior, and polling timeout formula
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* feat(subagents): add logging for subagent timeout config and execution
- Log loaded timeout config (global default + per-agent overrides) on startup
- Log debug message in registry when config.yaml overrides a builtin timeout
- Include timeout in executor's async execution start log
- Log effective timeout and polling limit when a task is dispatched
- Fix UnboundLocalError: move max_poll_count assignment before logger.info
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* ci(backend): add lint step and run all unit tests via Makefile
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* fix lint
---------
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
* fix: resolve issue #588 - react key warnings from duplicate message IDs + establish jest testing framework
* Update the makefile and workflow with the js test
* Apply suggestions from code review
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
* fix: using mongomock for the checkpoint test
* Add postgres mock setting to the unit test
* Added utils file of postgres_mock_utils
* fixed the runtime loading error of deerflow server
* fix: using commit hash as the action version
* fix: using commit hash as the action version
---------
Co-authored-by: Willem Jiang <143703838+willem-bd@users.noreply.github.com>
* feat: Enhance chat streaming and tool call processing
- Added support for MongoDB checkpointer in the chat streaming workflow.
- Introduced functions to process tool call chunks and sanitize arguments.
- Improved event message creation with additional metadata.
- Enhanced error handling for JSON serialization in event messages.
- Updated the frontend to convert escaped characters in tool call arguments.
- Refactored the workflow input preparation and initial message processing.
- Added new dependencies for MongoDB integration and tool argument sanitization.
* fix: Update MongoDB checkpointer configuration to use LANGGRAPH_CHECKPOINT_DB_URL
* feat: Add support for Postgres checkpointing and update README with database recommendations
* feat: Implement checkpoint saver functionality and update MongoDB connection handling
* refactor: Improve code formatting and readability in app.py and json_utils.py
* refactor: Clean up commented code and improve formatting in server.py
* refactor: Remove unused imports and improve code organization in app.py
* refactor: Improve code organization and remove unnecessary comments in app.py
* chore: use langgraph-checkpoint-postgres==2.0.21 to avoid the JSON convert issue in the latest version, implement chat stream persistant with Postgres
* feat: add MongoDB and PostgreSQL support for LangGraph checkpointing, enhance environment variable handling
* fix: update comments for clarity on Windows event loop policy
* chore: remove empty code changes in MongoDB and PostgreSQL checkpoint tests
* chore: clean up unused imports and code in checkpoint-related files
* chore: remove empty code changes in test_checkpoint.py
* chore: remove empty code changes in test_checkpoint.py
* chore: remove empty code changes in test_checkpoint.py
* test: update status code assertions in MCP endpoint tests to allow for 403 responses
* test: update MCP endpoint tests to assert specific status codes and enable MCP server configuration
* chore: remove unnecessary environment variables from unittest workflow
* fix: invert condition for MCP server configuration check to raise 403 when disabled
* chore: remove pymongo from test dependencies in uv.lock
* chore: optimize the _get_agent_name method
* test: enhance ChatStreamManager tests for PostgreSQL and MongoDB initialization
* test: add persistence tests for ChatStreamManager with PostgreSQL and MongoDB
* test: add unit tests for ChatStreamManager initialization with PostgreSQL and MongoDB
* test: enhance persistence tests for ChatStreamManager with PostgreSQL and MongoDB to verify message aggregation
* test: add unit tests for ChatStreamManager with PostgreSQL and MongoDB
* test: add unit tests for ChatStreamManager initialization with PostgreSQL and MongoDB
* test: add unit tests for ChatStreamManager initialization with PostgreSQL and MongoDB
---------
Co-authored-by: Willem Jiang <willem.jiang@gmail.com>
